{"id":606,"date":"2018-04-04T12:10:31","date_gmt":"2018-04-04T10:10:31","guid":{"rendered":"http:\/\/h3a.cbio.uct.ac.za\/?page_id=606"},"modified":"2022-06-10T12:27:24","modified_gmt":"2022-06-10T10:27:24","slug":"genome-analysis","status":"publish","type":"page","link":"https:\/\/h3africa.org\/index.php\/consortium\/working-groups\/genome-analysis\/","title":{"rendered":"Genome Analysis Working Group"},"content":{"rendered":"

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Genome Analysis<\/h3>\n
\n

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\"Neil<\/div><\/div>

Chair<\/h4>

Neil Hanchard<\/p>

<\/div><\/div><\/div>\n[\/vc_column][vc_column width=”1\/2″]
\"annanyo_sm\"<\/div><\/div>

Co-Chair<\/h4>

Ananyo Choudhury<\/p>

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Subgroup Overview<\/h4>\n
    \n
  1. Group members = ??<\/li>\n
  2. Groups represented = ??<\/li>\n
  3. Listserve for email communication<\/li>\n
  4. Timing – Twice monthly\/weekly once data is available and writing\/analysis commences<\/li>\n
  5. Agenda items will be requested 10 days prior<\/li>\n
  6. Agenda will be sent 4 days prior<\/li>\n
  7. Email as primary means of communication of documents<\/li>\n
  8. Skydrive vs Google Docs for document storage\/distribution<\/li>\n<\/ol>\n

    Role of the Subgroup<\/h4>\n
      \n
    • Managerial oversight of publications from Genome Analysis WG\n
        \n
      • Custom Chip<\/li>\n
      • African Diversity\/variation<\/li>\n<\/ul>\n<\/li>\n
      • Drive new directions\/ analyses for cross-group (2 or more) H3A manuscripts\n
          \n
        • Development and solicitation of new Manuscript Concept Documents (MCDs)<\/li>\n<\/ul>\n<\/li>\n
        • Specifically:\n
            \n
          • Collation and collection of MCDs relevant to genome analyses<\/li>\n
          • Develop and disseminate writing tasks and coordinate regular reporting<\/li>\n
          • Facilitate discussion of journal choice and mediate with editors.<\/li>\n<\/ul>\n<\/li>\n<\/ul>\n

            Mediate authorship in light of publications policies<\/p>\n

            Writing framework\/template<\/h4>\n
              \n
            1. Identify combination of junior and senior authors for introduction<\/li>\n
            2. Divide analysis into sub-headings\n
                \n
              1. Assign combination of junior\/senior authors to each sub-heading<\/li>\n
              2. Each sub-heading group should provide details of methodology & discussion of results<\/li>\n<\/ol>\n<\/li>\n
              3. Bi-weekly updates\/reports from each \u2018section\u2019 deposited to central writing depot\n
                  \n
                1. Minimal subheading report should consistent of a skeleton outline of each subheading giving further sub-headings\/groups, each expanded as writing progresses<\/li>\n<\/ol>\n<\/li>\n
                2. A core team of writing collaborators will pull together final manuscript by circulating and editing until all main authors are satisfied<\/li>\n
                3. Draft is then circulated to relevant senior faculty for additional input<\/li>\n
                4. New \u2018final\u2019 draft is then circulated to entire writing subgroup and then to collaborators for author approval and additional comments<\/li>\n<\/ol>\n

                  [\/vc_column_text][vc_btn title=”Download PDF Version” style=”outline” shape=”round” color=”juicy-pink” size=”sm” i_icon_fontawesome=”fa fa-download” add_icon=”true” link=”url:https%3A%2F%2Fdrive.google.com%2Ffile%2Fd%2F18Cn5AkJt1_ofOP4loI7p8EshyEMNtjqX%2Fview%3Fusp%3Dsharing||target:%20_blank|”][\/vc_tta_section][vc_tta_section title=”Minutes” tab_id=”1596784987916-6296fbb8-6ecc”][vc_basic_grid post_type=”page” max_items=”-1″ gap=”15″ item=”1019″ grid_id=”vc_gid:1654856770555-d2dad9b7255f93a2848be6958328aa1d-8″ taxonomies=”138″][\/vc_tta_section][\/vc_tta_accordion][\/vc_column][\/vc_row]<\/p>\n","protected":false},"excerpt":{"rendered":"

                  Standardization and harmonization of genomic data with respect to analysis platforms; imputation; data cleaning and quality control<\/p>\n","protected":false},"author":2,"featured_media":0,"parent":89,"menu_order":10,"comment_status":"closed","ping_status":"closed","template":"","meta":{"_coblocks_attr":"","_coblocks_dimensions":"","_coblocks_responsive_height":"","_coblocks_accordion_ie_support":"","footnotes":""},"categories":[],"tags":[172],"class_list":["post-606","page","type-page","status-publish","hentry","tag-wg"],"_links":{"self":[{"href":"https:\/\/h3africa.org\/index.php\/wp-json\/wp\/v2\/pages\/606","targetHints":{"allow":["GET"]}}],"collection":[{"href":"https:\/\/h3africa.org\/index.php\/wp-json\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/h3africa.org\/index.php\/wp-json\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/h3africa.org\/index.php\/wp-json\/wp\/v2\/users\/2"}],"replies":[{"embeddable":true,"href":"https:\/\/h3africa.org\/index.php\/wp-json\/wp\/v2\/comments?post=606"}],"version-history":[{"count":22,"href":"https:\/\/h3africa.org\/index.php\/wp-json\/wp\/v2\/pages\/606\/revisions"}],"predecessor-version":[{"id":12538,"href":"https:\/\/h3africa.org\/index.php\/wp-json\/wp\/v2\/pages\/606\/revisions\/12538"}],"up":[{"embeddable":true,"href":"https:\/\/h3africa.org\/index.php\/wp-json\/wp\/v2\/pages\/89"}],"wp:attachment":[{"href":"https:\/\/h3africa.org\/index.php\/wp-json\/wp\/v2\/media?parent=606"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/h3africa.org\/index.php\/wp-json\/wp\/v2\/categories?post=606"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/h3africa.org\/index.php\/wp-json\/wp\/v2\/tags?post=606"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}