5th African Microbiome Day
African Microbiomes in Action: From Multi-omics Data to Impactful Solutions
(Virtual Event)

Date: 21st September 2026

14:00 – 18:00 CAT / 12:00 – 16:00 GMT (see your time here)

Virtual Event

Abstract submission is now closed

Organizing Team

  1. H3Africa Coordinating Centre
  2. H3Africa Microbiome Task Force/African Microbiome Special Interest Group
    • Dr. Ovokeraye Oduaran
    • Dr. Soumaya Kouidhi
    • Prof. Lamech Mwapagha
    • Prof. Modupe Coker
    • Dr. Ibukun Abulude
    • Dr. Luicer Ingasia Olubayo
    • Mr. Bonface Gichuki
5th African Microbiome Day Agenda (Virtual Event)
African Microbiomes in Action: From Multi-omics Data to Impactful Solutions
GMT+2
September 21, 2026. (14:00 - 18:00 GMT+2)
Moderator
14:00 - 14:05
Welcome/Introduction
Dr. Ovokeraye Oduaran
Academic Session 1
14:05 - 14:23
Invited Speaker: Dr. Donald Nyangahu
Prof. 'Dupe Coker
Gut Microbiota from HIV-Exposed Uninfected Infants Causally Alters Growth, Bone and Immune Development
14:23 - 15:03
Selected abstracts for flash talks presentation (pre-recorded with combined real-time Q&A session)
Prof. Mahmoud ElHefnawi: Metagenomic Sequencing for detection of pathogens in Culture-Negative Infective Endocarditis in Egyptian Patients
Dr. Angeziwa Chunga: Gut microbiota composition and genomic characterisation of Bifidobacterium isolates from exclusively breastfed Malawian infants
Prof. Kingsley Anukam: Putative virulence genes found in Psychrobacter immobilis strain MUD-KCA23, relevance to necrotizing cellulitis
Dr. Syrine Nebli: Functional proteomic signatures reveal virulence-associated adaptations across the human ENT microbiome
Dr. Alif Chebbi: Endometriosis and the microbiome: from omics methodologies and mechanistic insights to future African research priorities
Combined Q&A
Industry Session
15:03 - 15:18
Dr. Nicki Adams: Delivering the Future of Microbial Genomics with Oxford Nanopore.
Prof. Lamech Mwapagha
15:18 - 15:33
Mr. William Nyakundi: Unlock the Full Microbiome Journey: From Sample Collection to Sequencing (Inqaba Biotec)
15:33 - 15:43
Information Session
Dr. Raylton Chikwati: Gut Immune Brain Axis (GIBA) Research in Africa
15:43 - 16:03
Break
Academic Session 2
16:03 - 16:21
Invited Speaker: Dr. Oussama Souiai
Prof. Soumaya Kouidhi
From Meta-Genomes to Actions: Genomic Surveillance at the One Health Interface of Agriculture, Wildlife, and Human Health
16:21 - 17:00
Selected abstracts for flash talks presentation (pre-recorded with combined real-time Q&A session)
Mrs. Kholden Amri & Ms. Nada Jendoubi: The Tunisian Pilot Study
Mr. Bonface Gichuki
Dr. Kristien Nel Van Zyl: Neglected Microbiota: the Mycobiome and Virome in African Populations
Mr. Patrick Tenga: A Deep Bayesian Causal Inference Framework for Integrating Multi-Omics and Imaging Data to Predict Neoadjuvant Therapy Response in Breast Cancer via the Tumor Microbiome-Immune Axis
Mr. Aaron Berkman: An African-specific k-mer database for improved human read removal in viral and bacterial metagenomic data
Combined Q&A
17:00 - 17:50
Keynote Speaker: Dr. Trevor Lawley
Dr. Luicer Olubayo
Early life gut microbiomes and longer-term health outcomes
17:50 - 18:00
Announcements/Thanks/Closing
Dr. Ovokeraye Oduaran

Moderators

Dr. Ovokeraye Oduaran


Honorary researcher at the Sydney Brenner Institute for Molecular Bioscience at the University of the Witwatersrand, Johannesburg, South Africa, and current chair of the H3Africa’s Microbiome Task Force.
Sydney Brenner Institute for Molecular Bioscience at the University of the Witwatersrand

Dr. Luicer Ingasia Olubayo


Visiting researcher at the Sydney Brenner Institute for Molecular Bioscience at the University of the Witwatersrand, Johannesburg, South Africa, and a member of the H3Africa’s Microbiome Task Force.
The Sydney Brenner Institute for Molecular Bioscience (SBIMB), University of the Witwatersrand

Dr. Soumaya Kouidhi


Soumaya Kouidhi, PhD, HDR is an Associate Professor at the University of Manouba, Tunisia, specializing in microbiome, precision medicine and translational research. Her work focuses on microbiome–host interactions in cancer, transplantation and chronic diseases, integrating multi-omics and AI. She is co-chair of the African Microbiome Science Initiative (AMSIG), promoting collaborative and equitable microbiome research across Africa.
Higher Institute for Biotechnology of Sidi Thabet, University of Manouba

Prof. Lamech Mwapagha


Head Molecular and Cancer Genomics Laboratory, Department of Biology, Chemistry and Physics, School of Natural and Applied Sciences, Namibia University of Science and Technology. Member H3Africa’s Microbiome Task Force.
Namibia University of Science and Technology, Namibia

Prof. Modupe Coker


Dr. Modupe Coker serves as the Assistant Dean of Clinical and Translational Research, Director of the Center for Clinical and Translational Research (CCTR), and as an Associate Professor in the Department of Basic and Translational Sciences at the School of Dental Medicine (Penn Dental Medicine), University of Pennsylvania. Her work focuses on the microbiome and its relationship with early-life infections, behavioral factors, and environmental influences on oral and dental health. Her work not only seeks to advance scientific understanding but also to translate research findings into practical solutions that benefit populations and communities.”
Penn Dental Medicine, University of Pennsylvania.

Dr. Ibukun Abulude


Postdoctoral researcher in the Department of Basic and Translational Science, Penn Dental Medicine, University of Pennsylvania. His research applies multi-omics approaches to investigate how shifts in the oral and gut microbiomes during early-life infections influence immune function and disease susceptibility.
Penn Dental Medicine, University of Pennsylvania

Mr. Bonface Gichuki


Genomics PhD student in the Host–Microbiota Interactions Lab at Wellcome Sanger Institute. His research investigates the gut microbiomes of children from Africa and South Asia to identify beneficial bacteria with therapeutic potential.
Wellcome Sanger Institute